Monday, December 1, 2014

Towards a New Environmentalism


Here are links to the articles that I mentioned in class that propose a new way to think about conservation and environmentalism.

Time to reboot: towards a new Environmentalism. by Joe Zammit-Lucia
http://www.iucn.org/knowledge/focus/nature_for_all/?9493/Time-to-Re-Boot-Towards-a-New-Environmentalism

Conservation is not about nature. by Joe Zammit-Lucia
http://www.iucn.org/involved/opinion/?8195/Conservation-is-not-about-nature

Ending on a Positive Note



Here is my contribution to ending the course on a positive note.

China outlaws the eating of tiger penis, rhino horn, and other endangered animal products.
https://news.vice.com/article/china-outlaws-the-eating-of-tiger-penis-rhino-horn-and-other-endangered-animal-products

Off the menu: China moves to protect endangered species.
http://www.cnn.com/2014/04/30/world/asia/china-wildlife-law/

China bans shark fin soup at banquets. http://www.huffingtonpost.com/2013/12/16/china-shark-fin-soup_n_4452897.html

Jackie Chan. I turned down shark fin soup.
http://www.telegraph.co.uk/news/newsvideo/celebrity-news-video/10635648/Jackie-Chan-I-turned-down-shark-fin-soup.html

Actor Jackie Chan supports anti poaching campaign.
https://www.youtube.com/watch?v=XCzoT-Flhzs

Yao Ming anti shark fin crusader
http://sports.yahoo.com/blogs/nba-ball-dont-lie/yao-ming-anti-shark-fin-soup-crusader-showing-185128028--nba.html

Ecosystem Services



Readings

Classic Paper

The value of the world’s ecosystem services and natural capital by Costanza et al.
NATURE |VOL 387 | 15 MAY 1997

http://www.esd.ornl.gov/benefits_conference/nature_paper.pdf


Other Suggested Readings

Ecosystem services: benefits supplied to human societies by natural ecosystems. Issues in Ecology, Ecological Society of America
http://www.esa.org/esa/wp-content/uploads/2013/03/issue2.pdf


Biodiversity and ecosystem services- http://www.eoearth.org/article/Biodiversity_and_ecosystem_services

Marine ecosystem services- http://www.eoearth.org/article/Marine_ecosystem_services

Ecosystem services and human well-being synthesis: summary for decision-makers.
http://www.eoearth.org/article/Ecosystems_and_Human_Well-being_Synthesis:_Summary_for_Decision-makers

Global Challenges



Here are links to a couple of different websites discussing some of the major "global challenges" facing us.


http://www.millennium-project.org/millennium/challeng.html


21st Century Grand Challenges. Office of Science and Technology Policy.  The White House.
http://www.whitehouse.gov/administration/eop/ostp/grand-challenges

Grand Challenges of Engineering. National Academy of Engineering.
http://www.engineeringchallenges.org/

Video- http://www.engineeringchallenges.org/Popups/Closeup.aspx

Grand Challenges in Global Health.
http://www.grandchallenges.org/Pages/Default.aspx

Grand Challenges of Development. USAID
http://www.usaid.gov/grandchallenges

Earth Science System for Sustainability: the Grand Challenges
http://www.icsu.org/publications/reports-and-reviews/grand-challenges


http://sites.nationalacademies.org/International/international_052200

Wednesday, November 12, 2014

Introduction to Biodiversity


Readings

Biodiversity- http://www.eoearth.org/article/Biodiversity

Species Diversity- http://www.eoearth.org/article/Species_diversity

Species Richness- http://www.eoearth.org/article/Species_richness


Slideshows

Introduction to Biodiversity

http://www.slideshare.net/MarkMcGinley/introduction-to-biodiversity-8383743

Biodiversity: Species, Classification, and Importance

http://www.slideshare.net/MarkMcGinley/biodiversity-species-classification-importance


Species Diversity in Malaysian Bats- Exercise

http://www.slideshare.net/secret/iQrgbLVr19ozgo

Diversity Exercise- Nemo

http://www.slideshare.net/MarkMcGinley/biodiversity-exercisenemo

Diversity Exercise- Candy

http://www.slideshare.net/MarkMcGinley/diversity-exercise-candy-8383776

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define biodiversity

- discuss components of biodiversity including species richness, species evenness, genetic diversity, etc.

- develop your own "metric" to measure biodiveristy

- use diversity indices such as Shannon Index and Simpson Index

Friday, November 7, 2014

Environmental Issues in China



Environmental Problems in China- WWF. http://wwf.panda.org/who_we_are/wwf_offices/china/environmental_problems_china/

Environmental Concern on the Rise in China
http://www.pewglobal.org/2013/09/19/environmental-concerns-on-the-rise-in-china/

Choking on Growth- New York Times
http://www.nytimes.com/interactive/2007/12/29/world/asia/choking_on_growth_10.html?_r=0

Severe Air Pollution Hits Shanghai (South China Morning Post. November 7, 2013)
http://www.scmp.com/news/china-insider/article/1349626/severe-air-pollution-hits-shanghai

Video

The Daily Show's Take on Air Pollution in China
http://www.thedailyshow.com/watch/thu-january-24-2013/things-may-be-bad--but-at-least-we-can-t-chew-our-air

The Devastating Effects of Pollution in China (part 1)
http://www.youtube.com/watch?v=q4DtOhe2LfQ

part 2
http://www.youtube.com/watch?v=_d-Ky7Se-v8

Thought Provoking Posts on my Facebook Page Today



Environmental Regulations


Readings

Clean Air Act, United States-
http://www.eoearth.org/article/Clean_Air_Act%2C_United_States

Clean Water Act, United States
http://www.eoearth.org/article/Clean_Water_Act%2C_United_States

Environmental Protection Agency
http://www.eoearth.org/article/Environmental_Protection_Agency%2C_United_States

Endangered Species Act, United States
http://www.eoearth.org/article/Endangered_Species_Act%2C_United_States

Convention on International Trade in Endangered Species (CITES)
http://www.eoearth.org/article/Convention_on_International_Trade_in_Endangered_Species_of_Wild_Fauna_and_Flora_%28CITES%29

Montreal Protocol on substances that deplete the ozone layer
http://www.eoearth.org/article/Montreal_Protocol_on_Substances_that_Deplete_the_Ozone_Layer

Kyoto Protocol
http://www.eoearth.org/article/Kyoto_Protocol

Kyoto Protocol and the United States
http://www.eoearth.org/article/Kyoto_Protocol_and_the_United_States

Powerpoint Presentation

Environmental Regulations
http://www.slideshare.net/secret/3KcVoxWWCDaVLZ

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- discuss important environmental legislation in the United States

- discuss the role of the Environmental Protection Agency and the US Fish and Wildlife Service

- discuss important international environmental agreements such as CITES, the Montreal Protocol, the Kyoto Protocol


Chemical Pesticides & Antibiotic Resistance



Further Reading

Evolution of Antibiotic Resistance-
http://www.pbs.org/wgbh/evolution/library/10/4/l_104_03.html

Antibiotic resistance: Questions and Answers- CDC
http://www.cdc.gov/getsmart/antibiotic-use/anitbiotic-resistance-faqs.html

Antibiotic resistance- delaying the inevitable (parts 1 and 2) UC Berkeley
http://evolution.berkeley.edu/evosite/relevance/IA1antibiotics2.shtml

HIV the ultimate evolver (parts 1-3) UC Berkeley
http://evolution.berkeley.edu/evosite/relevance/IA2HIV.shtml

Resisting our drugs-
http://understandingevolution.com/evolibrary/article/0_0_0/bergstrom_03

Turbochared evolution-
http://understandingevolution.com/evolibrary/article/side_0_0/turboevolution_01

Relevance of evolution:medicine-
http://understandingevolution.com/evolibrary/article/0_0_0/medicine_01

Powerpoint Presentation

Here is a link the the powerpoint presentation I used in class.

http://www.slideshare.net/secret/rPekyBdLalUvFY

Expected Learning Outcomes

By the end of the course a fully engaged students should be able to

- discuss some potential ecological and evolutionary problems that have arisen from the use of chemical pesticides

- discuss the causes of the development of antibiotic resistance

- discuss where antibiotics come from

- discuss what we have learned from ecology and evolutionary biology about potentila problems associated with antibiotic use

- discuss what we have learned from evolutionary biology that should help us fight microbial diseases more effectively

Monday, November 3, 2014

The Dust Bowl



The Dust Bowl was an environmental catastrophe, a natural hazard (multiannual drought) in the 1930s in the Southern Great Plains of the USA, resulting in the activation of a geomorphic process (intense wind erosion) which, when human society could not adapt to it, cascaded into unprecedented agricultural, economic, and societal collapse in its core region. Over the years, the cause of the Dust Bowl has been variably ascribed to specific climatic or meteorological phenomena or land management practices. Drought and wind erosion have been notable phenomena in the Southern Great Plains throughout the Holocene, occurring long before conversion of the land to agricultural use, and still continue today. (Gill and Lee 2006)

Further Readings

Dust Bowl http://www.eoearth.org/article/Dust_Bowl

The Dust Bowl http://www.u-s-history.com/pages/h1583.html

On the cause of the 1930s Dust Bowl. Science 2004 http://www.sciencemag.org/content/303/5665/1855.abstract

NASA explains the Dust Bowl Drought http://www.nasa.gov/centers/goddard/news/topstory/2004/0319dustbowl.html

A critical evlauation of the Dust Bowl and its causes. Gill and Lee. 2006
http://adsabs.harvard.edu/abs/2006AGUFM.A44C..06G

What America Looked Like: The Dust Bowl (2012 in The Atlantic. lots of good photos)
http://m.theatlantic.com/national/archive/2012/02/what-america-looked-like-the-dust-bowl/253220/#slide3

Misery on a Grand Scale: The Drought of today and Yesteryear. Wynan Meinzer is a photographer who teachers photography at Tech. He teaches Wildlife Photography at Junction during Intersession which would be a great experience for all budding photographers.
http://www.wymanmeinzer.com/misery-on-a-grand-scale-the-drought-of-today-and-yesteryear/

Video

Surviving the Dust Bowl. PBS
http://video.pbs.org/video/1311363860/

Friday, October 31, 2014

Politically-challenged. Texas Tech Edition



https://www.youtube.com/watch?feature=player_embedded&v=yRZZpk_9k8E

Lionfish




Lionfish

Distribution of Lionfish

http://lionfish.gcfi.org/manual/InvasiveLionfishGuide_GCFI_SpecialPublicationSeries_Number1_2012.pdf

Articles

NOAA_ Why are lionfish a growing problem in the Atlantic Ocean?
http://oceanservice.noaa.gov/facts/lionfish.html


Lionfish. National Invasive Species Information Center. USDA
http://www.invasivespeciesinfo.gov/aquatics/lionfish.shtml


Invasion of the lionfish. Smithsonian.com
http://www.smithsonianmag.com/science-nature/invasion-of-the-lionfish-131647135/


Lionfish invasion is threatening the Atlantic Ocean
http://www.upi.com/Science_News/2013/10/21/Lionfish-invasion-is-threatening-the-Atlantic-Ocean/9321382363683/


Lionfish infestation in Atlantic Ocean a growing epidemic. CNN October 19, 2013

Invasive lionfish: a guide to control and management

Persistent hunting can help win the war on lionfish.




Videos

Lionfish Population Has Scientists Worried- 2008
https://www.youtube.com/watch?v=Ar0CX8dj948

TED talk- Mark Hixon (Marine Biologist)
http://hixon.science.oregonstate.edu/content/highlight-lionfish-invasion

All you can eat lionfish

Feral Hogs

A plague of pigs in Texas. Smithsonian.com
http://www.smithsonianmag.com/science-nature/a-plague-of-pigs-in-texas-73769069/

Feral hogs in Texas. Texas Cooperative Extension
http://icwdm.org/publications/pdf/feral%20pig/txferalhogs.pdf

Texas losing war on feral hogs. Houston Chronicle. July 2013/
http://www.chron.com/sports/outdoors/article/Texas-losing-war-on-feral-hogs-4685490.php

Can wild pigs ravaging the US be stopped? Scientific American. October 21, 2014
http://www.scientificamerican.com/article/can-wild-pigs-ravaging-the-u-s-be-stopped/





Videos

Killer Aliens: Feral Hogs
http://www.animalplanet.com/tv-shows/other/videos/killer-aliens-feral-hogs.htm

Wild hogs impacting Texas agriculture- American's Heartland.
https://www.youtube.com/watch?v=m3KSMSrJQGk

Feral pigs in Australia
https://www.youtube.com/watch?v=bNSngI9ttgo

Cost of Invasive Species

Environmental and economic costs of vertebrate species invasions into the United States. David Pmental. 2007
http://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1037&context=nwrcinvasive



Wednesday, October 29, 2014

Interesting Recent Articles About Human Population Growth





Population Controls Will Not Solve Environmental Issues. BBC. Oct. 27, 2014

http://www.bbc.com/news/science-environment-29788754


It's Not A Small World Afterall: World Population Will Soar

http://www.bbc.com/news/science-environment-29788754


World Population Stabilization Unlikely This Century. Science October 2014

http://www.sciencemag.org/content/346/6206/234.abstract

Invasive Species



Invasive species are an important threat to biodiversity and can be very costly to humans.

Further Reading

1) Invasive Species- http://www.eoearth.org/article/Invasive_species

2) Marine Invasive species - http://www.eoearth.org/article/Marine_invasive_species

3) Aquatic Invasive Species- http://www.eoearth.org/article/Aquatic_invasive_species

4) Invasion Fact Sheet- http://www.eoearth.org/article/Invasion_fact_sheet

Powerpoint Presentation

Invasive Species Slideshow- http://www.slideshare.net/secret/bL1TCLiLtoH5Np


Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- discuss threats caused by invasive species
- discuss strategies to exclude or eliminate invasive species
- discuss some invasive species in Texas
- discuss factors that allow species to invade new communities

Friday, October 17, 2014

Human Population Growth



I have spent a lot of time telling you that exponential growth is an unrealistic model of population growth. Interestingly, human populations have experienced exponential-like growth. How can this be?

What makes humans different from other species?

In other species per capita birth rates and per capita deaths rates are density dependent. However, as human populations have increased there has been no corresponding decline in per capita birth rates or increase in per capita death rates. What makes humans different from other species?

Humans have the ability to alter their environment so that they can avoid the density dependent effects on birth and death rates. 1) Humans have increased food production by improvements in agriculture (e.g., irrigation, fertilization, mechanized farming, genetically improved crops). 2) Humans have been able to decrease death rates by improvements in medicine and public health (things as simple as not pooping in the water you drink helps a lot!). 3) Humans have elimnated most human predators (ocassionally, someone gets killed by a shark or a mountain lion).

Where is human population growth occuring?

The rates of human population growth are not the same in all regions. Today, human populations are increasing in size much faster in developing countries (e.g., Mexico, other countries in Central America, Africa, and Southeast Asia) than they are in developed countries (e.g, USA, Canda, Western Europe). The figure at the top of this post shows the patterns of population growth in developed and developing nations.

Thus we see that populations are increasing most rapidly in the countries that are least able to deal with a rapidly increasing population. See "Population Challenges-The Basics" that can be downloaded from the Population Institute's website.
http://www.populationinstitute.org/population-issues/index.php

Human Population Growth Problem?

There is a great deal of debate about whether increasing human populations are a problem or not, and if they are what should be done about it. Unfortunately, we don't have time to discuss this issue in very much detail in class. My personal opinion is that we have too many people consuming too many resources and the last thing that we need are billions more people living on the planet. This is an issue that I am always intersted in talking more about if you would like to chat.

Further Reading

"Human Population Explostion" from the EoE.
http://www.eoearth.org/article/Human_population_explosion


Website

World Population Clock (and other interesting info)
http://www.worldometers.info/population/

Really Cool Video

Here is a link to a YouTube video on "World Population" The first minute and a half or so is a little boring, so you can skip over it if you wish. However, I think the animation showing when and where human population growth has been occuring is really cool.

http://www.youtube.com/watch?v=4BbkQiQyaYc

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- describe patterns of human population growth in developed and developing nations

- discuss some reasons why the pattern of population growth in humans is so different from that in other species

- describe the demographic transition

- discuss their own personal view of human population growth.

Monday, October 13, 2014

Population Biology III: Logistic Growth


We are trying to develop a mathematical model that helps us to understand patterns of population growth. So far our first attempt, the exponential growth model, did not help us to understand population growth (for reasons that I hope that you understand by now).

The "Real" world

In our attempt to think about population growth in the real world, we attempted to examine how per capita birth rates and per capita death rates should vary as population size varies. The model that describes this pattern of growth is known as the logistic growth model. It is important to realize that although this model is much more realistic, and therefore useful to us, than the exponential growth model, the logistic growth model still only examines what I call "the theoretical real world". That is, this model applies to our ideas about how populations should generally behave and do not thus relate directly to studying the population sizes of white tailed deer in central Texas or parrot fish on a coral reef in Fiji.

Logistic Growth

We have discussed why, in the real world, r should decrease as population sizes increase. If this is the case then there is a population size at which the per capita birth rate equals the per capita death rate. We call this population size the carrying capacity.

1) When populations are smaller than the carrying capacity we expect them to increase in size until they reach the carrying capacity.

2) When populations are larger than carrying capacity we espect them to decrease in size untile they reach the carrying capacity.

3) When the population size equals the carrying capacity we expect no change in the size of the population.

The logistic growth equation is a mathematical equation developed by biologists to describe patterns of population growth consistent with the ideas above. Before focusing on the biological isights that we can gain from the logistic growth model (the real purpose of everything we have been doing) it is important to really understand patterns of logistic growth. Hopefully, this powerpoint presentation will help you understand these patterns better.

Powerpoint Presentation

Click here for a powerpoint presentation entitled "Fun With Graphs- Logistic Growth"

http://www.slideshare.net/secret/gyB3cjnSplLw41

NOTE: THERE IS AN ERROR ON SLIDE 16 OF THIS PRESENTATION!!!

The title of the graph on slide 16 should read "Logistic Growth: dN/dt vs t (Not N), N initially << k"

The x-axis of the graph is TIME (please ignore the values of K on the x-axis because K does not belong on the time axis). The shape of the graph is correct. Make sure you change the x-axis to Time rather than Population Size.

Expected Learning Outcomes

By the end of this course a fully engaged students should be able to

- define the carrying capacity

- draw, and interpret the following graphs associated with logistic growth
a) how population size changes over time in logistic growth when the initial population size is much smaller than the carrying capacity
b) how population growth rate changes over time in logistic growth when the initial population size is much smaller than the carrying capacity
c) how the per capita growth rate varies over time in logistic growth

- discuss the causes for the shape of the s-curve (this answer will need to include a discussion of both math and biology)

- discuss the factors that regulate population size, be able to distinguish between density dependent and density independent factors that regulate population growth and give examples

Population Biology II: Exponential Growth


From the first lesson on Population Ecology we learned that the population growth rate (dN/dt) can be calculated as the product of the per capita growth rate (r) and the population size (N).

dN/dt = rN

This is the fundamental equation describing population growth and this equation is always true.

If we want to use this equation to analyze how population sizes change over time, then it makes sense to start by examining the simplest formulation of this equation which occurs when the per capita growth rate is constant. The equation dN/dt = rN when r is constant is known as the exponential growth equation and this equation describes a patter on growth known as exponential growth.

The graph plotting how population size changes over time is shown in the Exponential Growth article. This graph shows an exponential growth curve (sometimes known as the "j-curve"). If you have questions about why the graph has this shape let me know and I will try to explain it more thoroughly.

It is important that you are able to look at this graph and determine all of the information held in the graph. The exponential growth curve allows us to discuss how two parameters change over time- 1) the population size (shown by the x-axis) and 2) the population growth rate (shown by the slope of the line). I find that it is easier to discuss only one parameter at a time so let's start with the population size.

1) Over time, the population size increases (we know this because the line has a positive slope).

Now let's think about the population growth rate.

2) Over time, the population growth rate increases (we know this becasue the line gets steeper over time.

3) Over time, the rate at which the population growth rate increases over time, increases over time (we know this because the slope increases faster and faster over time).

Thus, if populations are growing exponentially then they keep increasing in size at an ever faster rate forever and ever.

Now try this-

Can you draw the following graphs?

1) plot how the population growth rate varies over time.
(hint- we have alredy described what this pattern will look like using words- just turn these words into pictures).

2) plot how the population growth rate depends on population size.
(hint- this graph is a little trickier, but we do have an equation that relates the two variables)

3) plot how the per capita growth rate varies over time.
(hint- think about what the basic assumption we made aboiut exponential growth)

4) plot how the per capita growth rate
(see the hint from number 3)

Exponential Growth is Unrealistic
Because population sizes keep increasing at ever faster rates for ever, exponential growth does not seem to be an accurate description of population growth in most animals, plants, and microbes. If this is an unrealistic model then why did I teach it to you? I started with exponential growth becasue it is the simplest model of population growth and scientists always like to describe the world using the simplest models that they can.

Obviously, in this case we have started with a model that is too simple to realistically describe the world. What is wrong with the exponential growth model? The fundamental assumption we made about exponential growth is that the per capita growth rate is constant. This must not be a realistic assumtpion.

It is important that you understand, and are able to explain, both the mathematical reasons and biological reasons that exponential growth is an unreasonable model of population growth. I tried to explain biologically why exponential growth is unrealistic in the "Exponential Growth" article and the attached Powerpoint presentation so take a look at those.

Suggested Readings

Here are some articles you should look at from the Encyclopedia of the Earth. I wrote these so they are brilliant!!!

Population Ecology http://www.eoearth.org/article/Population_ecology

Exponential Growth http://www.eoearth.org/article/Exponential_growth

Logistic Growth http://www.eoearth.org/article/Logistic_growth

Carrying Capacity http://www.eoearth.org/article/Carrying_capacity

Intraspecific Competition http://www.eoearth.org/article/Intraspecific_competition

Powerpoint Presentation

Click here for the Powerpoint presentation "Why is Exponential Growth Unrealistic?"
http://www.slideshare.net/secret/IDPugQtl2wvONv

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- draw and interpret the following graphs associate with exponential growth

a) how population size change over time in exponential growth

b) how population growth rate varies over time in exponential growth

c)  how per capita growth rate changes over time in exponential growth

e) how per capita growth rate depends on population size in exponential growth

- explain why exponential growth is an unrealistic pattern of growth for most species

- define and explain the carrying capacity

Population Biology 1- Basic Parameters

Expected Learning Outcomes

By the end of this course, a fully engaged student should be able to

- define b, d, r, B, D, dN/dt.

- identify and use the proper units associated with each parameter

- use the correct algebraic equations to calculate each of these parameters

- be equally comfortable referring to these concepts verbally or via their algebraic symbols.

Basic Parameters of Population Ecology

Here is a brief introduction to some of the important parameters that we will need to understand to be able to study population ecology. For each of the parameters it is important that you know (1) the name of the parameter, (2) the algebraic symbol used to represent the parameter, (3) the units of measurement for the parameter, (4) how to calculate the parameter, and (5) how to describe (in words) what a particular value of that parameter means.

It is probably easiest for me to introduce these concepts using an example.
Imagine that in a population of 100 elephants that in one year 10 elephants are born and 5 elephants die.

1) Population Size (N) units- individuals. Measures the number of individuals in a population.

N = 100 individuals

In this population of elephants, there are 100 individuals.

2) Population Birth Rate (B) units- number of births per time. Measures the number of births per time that occur in a population.

B = 10 births/year

In this population, each year there are 10 births.

3) Population Death Rate (D) units- number of deaths per time. Measures the number of deaths per time that occur in a population.

D = 5 deaths/year

In this population, each year there are 5 deaths.

4) Population Growth Rate (dN/dt) units- number of idividuals per time. Measures the rate of change of the population size.

dN/dt = B - D

dN/dt = 10 births/year - 5 deaths/year = 5 individuals/year

In this population, the population size increases by 5 individuals each year.

5) Per Capita Birth Rate (b) units- births per time per individual. Measures the number of births per time averaged across all members of the population.

b = B/N

b = (10 births/year)/100 individuals = 0.10 births/year/individual

In this population, each year 0.10 babies are born for each individual in the population.

6) Per Capita Death Rate (d) units - deaths per time per individual. Measures the number of deaths per time averaged across all members of the population.

d = D/N

d = (5 deaths/year)/100 individuals = 0.05 deaths/year/individual

In this population, each year 0.005 individuals die for each individual in the population.

7) Per Capita Growth Rate (r) units = individuals/time/individual. Measure the rate of change in population size averaged across all individuals. The per capita growth rate can be calcuated two ways.

a) r = b - d

r = 0.10 births/year/individual - 0.05 deaths/year/individual = 0.05 ind/year/ind

b) r = (dN/dt)/N

r = (5 individuals/year)/100 individuals = 0.05 individuals/year/individual

In this population, each year 0.05 individuals are added for each individual in the population.

Practice Problem

1. In a population of 50 tigers, in one year 10 tigers are born and 20 tigers die. What is B, D, dN/dt, b, d, r?

Writing Assignment #2





Use what you have learned about the ecology of Yellowstone National Park to introduce an intelligent friend/family member to my favorite statement about ecology- "the world is complicated".

3 pages max (you may add an additional page for references)

Rough draft due- Friday October 17

Workshop Papers- Monday Octoer 20th

Final Draft Due- Monday October 27th

Fire and Wolves in Yellowstone National Park





Powerpoint Presentation

http://www.slideshare.net/MarkMcGinley/fires-wolves-yellowstone


Expected Learning Outcomes

By the end of this course a fully engaged student should be able to


1) Discuss the importance of indirect interactions in communities.

2) Define a trophic cascade and differentiate between top down and bottom up regulation.

3) Discuss the effect of the 1988.

4) Discuss the effect of the reintroduction of wolves to Yellowstone National Park

Friday, October 3, 2014

Disturbance Ecology

The approach that community ecologists use to understand patterns of biodiversity depends on whether they think that communities are full (i.e., member of communities is limited by biotic interactions such as competition and predation) or whether communities are not full. The "equilibrial approach" to understanding community structure assumes that community membership is limited by competition. Thus, to understand the number of species in a community it will be necessary to understand the number of potential distinct niches. The "non-equilibrial approach" assumes that some procese or processes (such as predation or disturbance) have limited competitive exclusion.

Disturbance Ecology

Ecological disturbances are one example of a process that can limit competitive exclusion. If a disturbance disrupts population growth of a superior competitor, then the population size of the superior competitor may not get large enough to competitively exclude other species.

Powerpoint Presentation

http://www.slideshare.net/secret/GH30nvAxRaF4P


Further Reading

1) Here is a link to a chapter entitled - The response of animals to disturbance and their roles in patch generation. that Mike Willig and I wrote for a book Ecosystems of Disturbed Ground. The first portion of this chapter talks about our view of disturbance the second discusses some of my research in Texas.

http://hydrodictyon.eeb.uconn.edu/people/willig/Willig_pdf/094.Willig&McGinley.1999.pdf

2) The Fire Ecology Factsheet- http://www.eoearth.org/article/Fire_ecology_fact_sheet


Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define disturbance
- list examples of disturbances
- distinguish between a disturbance and a disaster
- discuss the characteristics of a disturbance regime
- discuss some adaptations of organisms to disturbances
- discuss why disturbances are natural parts of many ecosystems
- discuss the intermediate disturbance hypothesis

Free Learning: Tilman's Model of Competition for Two Limiting Resources


In case you are interested in seeing how the model of competition for one limiting resource can be extended to a model of competition for 2 limited resources.

Slideshow

http://www.slideshare.net/MarkMcGinley/tilmans-model-of-competition-for-two-resources

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

1)define ZNGI, consumption vector, supply vector, resource supply point

2)determine the outcome of competition when provided with information about ZNGIs, consumption vectors, and resource supply point.

3) distinguish between a stable and unstable equilibrium and be able to discuss why stable equilibria are particularly important outcomes from these models.

Thursday, September 25, 2014

Pygmy Seahorses


photo by Alexander Mustard

Here is a video about what might be my all time favorite organisms!!

http://bcove.me/nmccqd8i

Tuesday, September 23, 2014

Competition in Animals and Plants



Readings

Competitive Exclusion Principle http://www.eoearth.org/article/Competitive_exclusion_principle

Resource Partitioning and Why It Matters
http://www.nature.com/scitable/knowledge/library/resource-partitioning-and-why-it-matters-17362658

Slideshow

http://www.slideshare.net/MarkMcGinley/competition-in-animals-and-plants

Expected Learning Outcomes

By the end of this course a full engaged student should be able to

1) discuss the relationship between the fundamental and realized niche

2) discuss some ways animals can partition niches

3) define and describe character displacement

4) discuss why plants and animals may not be able to partition niches in the same way

5) explain Tilman's R* model

The Daily Show Discusses House Committee on Science, Space, and Technology



Interesting Daily Show segment covering climate change discussions taking place on the House Committee on Science, Space and Technolgy.

http://thedailyshow.cc.com/videos/8q3nmm/burn-noticed?xrs=synd_facebook_092314_tds_60

Thursday, September 18, 2014

Intro to Community Ecology



Suggested Readings

Community Ecology- http://www.eoearth.org/article/Community_ecology

Competition- http://www.eoearth.org/article/Competition

Interspecific Competition- http://www.eoearth.org/article/Interspecific_competition

Exploitative Competition- http://www.eoearth.org/article/Exploitative_competition

Predation- http://www.eoearth.org/article/Predation

Mutualism- http://www.eoearth.org/article/Mutualism

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- define competition, exploitative competition and interference competition

- identify and explain examples of exploitative and interference competition from a variety of environments

- define predation (narrow and broad sense), herbivory, and parasitms

- identify and explain examples of predation, herbivory, and parasitism from a variety of environments

- identify examples of morphological and behavioral adaptations that animals have to help capture their food

- identify examples of morphological, biochemical, or behavioral adaptations that animals have to protect them from predators

- identify and explain examples of mutualisms from a variety of habitats

- define a keystone species and an ecosystem engineer and provide examples of each.

Ecocsystem Ecology




Ecosystem ecologists focus on the flow of energy and the cycling of nutrients through the ecosystem.

Further Readings

Ecosystems- http://www.eoearth.org/article/Ecosystem

Ecological energetics- http://www.eoearth.org/article/Ecological_energetics

Nitrogen cycle- http://www.eoearth.org/article/Nitrogen_cycle

Expected Learning Outcomes

By the end of this course a fully engaged student should be able to

- diagram and discuss the flow of energy through an ecosystem
- diagram, discuss the causes of, and discuss some of the implications of the enegy pyramid
- diagram nitrogen cycle within an ecosystem
- discuss the factors that influence the rate of flow from dead bodies to the soil and discuss the implications of differences in this rate

Depressing Example of Science Denial



Wealthy L.A. Schools; Vaccination Rates are as Low as South Sudan's.

http://www.theatlantic.com/health/archive/2014/09/wealthy-la-schools-vaccination-rates-are-as-low-as-south-sudans/380252/


Thursday, September 11, 2014

Some Things to Think About When Working on Your Writing Assignments




I am sure that you are all trying to figure out exactly what I, and your other professors, expect on your written assignments.  Some professors will supply you with a detailed "rubric" outlining exactly what you are expected to do and how points will be allocated for the assignment.  I do not supply rubrics.  Instead, I grade on the "gestalt" basis assigning an A for work that does an excellent job meeting the requirements of the assignment, a B for work that does a good job, etc.  The main reason that I do not provide a detailed rubric is that I think that can limit and inhibit your creativity on how you complete an assignment.

However, I do think that it would be useful for me to provide you with some more explicit guidelines about what I am looking for.  The Association of American Colleges and Universities has developed suggested rubrics on how to evaluate a college level work.  I will post links to two of these rubrics, Written Communication and Critical Thinking, which might be helpful as you begin preparing your assignments for this and other classes.

Written Communication- https://apir.wisc.edu/assessment/Rubric_WrittenCommunication.pdf

Critical Thinking- http://assessment.arizona.edu/sites/default/files/CriticalThinking.pdf

Writing Assignment #1





We need to start by having a conversation about climate change. It would be irresponsible to avoid the issue just because it's uncomfortable to talk about.

I would like you to start a conversation about climate change with one of your fellow TTU students.  Identify your audience (you don't need to identify them by name, but identify the important characteristics of this person that will influence how you direct your conversation).


3 pages maximum, double spaced, Times New Roman 12 point font (if you include references you may add an additional page for references)

First Draft Due-Wednesday November 12th

Writing Workshop-  Friday November 14th

Final Draft Due- Monday November 24th

Tuesday, September 9, 2014

Conflicting Climate Change Reports



Hello Everyone,

Here are links to two articles drawing very different conclusions over whether global temperatures are increasing or not that showed up on my Facebook page yesterday (I have friends from all parts of the political spectrum).

Report: No Global Warming for the Last 215 Months.  http://dailycaller.com/2014/09/08/report-no-global-warming-for-215-months/


The pause in global warming is not even a thing. http://www.theguardian.com/environment/planet-oz/2014/feb/12/global-warming-fake-pause-hiatus-climate-change


And two more.

The Global Warming Pause Puts "Crisis" in Perspective.  http://www.forbes.com/sites/jamestaylor/2014/08/07/global-warming-pause-puts-crisis-in-perspective/

Who Created the Global Warming Pause?
http://www.motherjones.com/environment/2013/09/global-warming-pause-ipcc


Groupers and Eels Work Together to Hunt Prey



Here is an interesting article about a fascinating ecological relationship between a grouper and an eel who work together to catch their prey.  It appears that there is communication going on between the two species and that they are able to remember which individuals are good partners and which are not.  Pretty cool!!!

http://newswatch.nationalgeographic.com/2014/09/08/groupers-eels-animals-science-oceans-teamwork-hunting-prey/?utm_source=Facebook&utm_medium=Social&utm_content=link_fb20140908ngnw-eelsgroup&utm_campaign=Content&sf4540429=1

Monday, September 8, 2014

Tech Professor Receives Death Threats Over Climate Change



Here is a link to a couple of articles about Tech Political Science Professor Katharine Hayhoe. Dr. Hayhoe is a climate scientist whose research supports the conclusion that human activity have helped to cause global climate change. Dr. Hayhoe is perhaps unique in the debate about climate change because she is an evangelical Christian and she and her husband, a pastor, have written a book about climate change from an evangelical perspective.

http://www.katharinehayhoe.com/

I was quite disturbed to learn that her views have led to her receiving death threats!! If you would like to know more about this then please take a look at the following articles. I think these articles show how misunderstood the process of science is by many Americans!

Texas Tech scientist sees intimidation effort behind barrage of hate mail. http://texasclimatenews.org/wp/?p=4153

Newt Dumps Christian Climate Scientist
http://motherjones.com/environment/2012/01/newt-dumps-leading-climate-scientist

Climate Change Deniers and IPCC




Here is my (incomplete and poorly organized attempt) to try to gather additional useful and interesting information about climate change.  First, I will post the "Summary for Policy Makers" recently released by the IPCC and a recent USA Today article expressing and opposite viewpoint.
The I will list some links to some "climate change deniers" groups (this list is certainly not exhaustive).  Finally I have included links to some interesting videss on both sides of the "climate debate".

IPCC Report

IPCC Summary for Policy Makers- http://www.climatechange2013.org/images/uploads/WGIAR5-SPM_Approved27Sep2013.pdf

IPCC Exaggerates Risks: Opposing View (USA Today October 14, 2013)- http://www.usatoday.com/story/opinion/2013/10/14/ipcc-climate-change-heartland-institute-editorials-debates/2983941/

The Science Fiction of IPCC Climate Models. (Heartland Institute, October 12, 2013)- http://news.heartland.org/editorial/2013/10/12/science-fiction-ipcc-climate-models

Some Climate Change Denial Groups

Heartland Institute- http://heartland.org/

Climate Change Dispatch- http://www.climatechangedispatch.com/

GlobalClimateScam.com- http://www.globalclimatescam.com/

Climate Change Denial-http://www.climatechangedispatch.com/

Friends of Science- http://www.friendsofscience.org/index.php?id=158

Heartland Institute and its NIPPC Report fails the credibility test- http://www.climatesciencewatch.org/2013/09/09/heartland-institute-nipcc-fail-the-credibility-test/

Videos

Rick Perry Debate- http://www.youtube.com/watch?v=qoPvxcwZ5xw

Global Warming Panic Explained- http://www.youtube.com/watch?v=cdxaxJNs15s&feature=player_embedded

Providing Insight into Climate Change- http://www.friendsofscience.org/index.php?id=394

The Truth About Global Warming- Stephen Schneider: http://www.youtube.com/watch?v=4_eJdX6y4hM

Bill Nye vs Marc Morano (CNN debate) http://www.youtube.com/watch?v=gWT-EWKIR3M

Koch Industries and Climate Denial - http://www.greenpeace.org/usa/en/campaigns/global-warming-and-energy/polluterwatch/koch-industries/

Climate Deniers: Bill Maher- http://www.youtube.com/watch?v=0OwFSLm4pII  (careful, contains a few naughty words)

John Oliver and Bill Nye on Climate Change Deniers. http://uproxx.com/tv/2014/05/john-oliver-and-bill-nye-on-the-opinions-of-climate-change-deniers-who-gives-a-sht/  (careful, also contains a few naughty words)

Funny Video: Dad, I Can't Take You Anywhere, Even the Science Fair



http://action.lcv.org/site/PageNavigator/Science_Fair_Nightmare_video_share.html

Political Beliefs Change How People Do Math


Here is a link to an interesting article, that was posted on Facebook by Dr. Jeff Lee a professor in the Geography Department at Tech.   The article reports on the results of a study showing how a political beliefs can cloud a person's ability to think clearly about numbers.

http://www.motherjones.com/politics/2013/09/new-study-politics-makes-you-innumerate

Please read this article carefully over the weekend so that we can discuss it on Monday.

Here is an interesting follow up article in case you are interested.

The Science of Why We Don't Believe Science.
http://www.motherjones.com/politics/2011/03/denial-science-chris-mooney

How to Talk to a Climate Skeptic


How to talk to a climate skeptic: responses to the most common skeptical arguments on global warming.

http://grist.org/series/skeptics/#.UvuhszYb1HU.facebook

Mantis Shrimp




This article, from Sept. 7th, 2014 contains a video showing a mantis shrimp cracking open a clam and a photo of a giant mantis shrimp that someone caught in Florida last week.

http://www.accuweather.com/en/weather-news/mantis-shrimp-warm-waters-lurk-video/33498799

This longish video (over 7 minutes long) discusses many interesting aspects of  how the mantis shrimp uses its claws.  Pretty interesting.

https://www.youtube.com/watch?v=LXrxCT0NpHo


Why the mantis shrimp is my new favorite animal (also pretty cool)

http://theoatmeal.com/comics/mantis_shrimp

Peacock Spiders



Cool Video.

https://www.youtube.com/watch?v=d_yYC5r8xMI

Governor Perry's Comments Regarding Climate Change


Here is a link to a video with Governor Perry's answer to a question about climate change at the Republican Presidential Candidates' Debate on September 7, 2011.

**I am sorry that I couldn't find a clip on youtube that lacked a "comment" in the title of the video- I'll report, you decide ****

http://www.youtube.com/watch?v=eYOQDz9Gt0Q

Friday, September 5, 2014

Amazing Bird Sounds of the Lyrebird



Here is link to a short video, narrated by David Attenborough, showing the amazing mimicry ability of the lyrebird.  This video is one of my all-time favorites.

https://www.youtube.com/watch?v=VjE0Kdfos4Y

Lyrebirds, are medium-sized, ground-nesting birds found in Australia.  These birds are well know for (1) their ability to mimic the sounds of other birds (and other sounds in their environment) and the elaborate mating display of the male (shown above).  When I was about 12 or 13 years old I was living in Melbourne, Australia.  One Saturday my Dad and I drove to a forest area where lyrebirds live hoping to see one.  After hiking around for less than an hour we discovered a male and after following him for just a short while we were lucky enough to see the full display.  We were joined by an Australian wildlife photographer who said he had been exploring the forest for the last two weeks and this was the first display he saw.  I sure got lucky that day! (by now it should be clear that my biology nerdom started at a young age)